| INEDI Mapping: (updated 27/08/09) | powered by |  | , MCQTL and BIOMERCATOR |
1. Input files:
| Internal Source file: | Download from the Web |
| 255 genotypes | |
| 163 genotypes on "B" cytoplasm [without bias on LG13] | Only the RIL derived from XRQ [B] * PSC8 |
2. Building of Linkage Groups ("group" command of Carthagène):
| FILE | Carathagene Command | Results |
| 255_genotypes_optimis.carth | group 0.5 5 | "strong" |
| 255_genotypes_optimis.carth | group 0.6 3 | "weak" |
| 255_genotypes_optimis_12-06-08.carth | group 0.5 5 | "strong 12-06-08" |
| 255_genotypes_265mk_02-09-08.carth | group 0.5 5 | Adding genotypes for ORS323, ORS818, + new locus for SSL225 + supplementary data for ORS316 |
| 255_genotypes_293mk_11-06-09.carth | group 0.5 5.5 | Adding SSR and BES markers |
| 255_genotypes_311mk_19-08-09.carth | group 0.5 5.5 | Adding SSR and BES markers |
3. Map building for each Linkage Group :
4. Final result of CARTHAGENE: .map file for MCQTL
| HP1_16-05-08.map |
| Update 20/06/08 |
| Update 22/09/08 |
| Update 31/10/08 |
| Update 26/08/09 |
5. Genotypic data for MCQTL: .gen file
| 255_genotypes_optimis.gen: merging Clermont-Ferrand and N.Pouilly genotyping data |
| 18/09/08 update, after integrating 21 new markers |
| 31/10/08 update |
| 26/08/09 update |
6. Phenotypic data for MCQTL : .phen file (example: quantitative resistance to Sclerotinia
| Sclerotinia, INRA Clermont-Ferrand data : Vear et al., 2008 |
7. XML file from MCQTL on Sclerotinia data (example: QTL for Latency Index)
| sclero_Latency_Index_iQTLm.xml |
8. Image of LG10 from BIOMERCATOR , from MCQTL XML File
