INRAE Sunflower Bioinformatics Resources

SUNRISE
LIPME Bioinfo
Helianthus Wiki
Huang et al., PNAS, 2022 Datasets

Genomes

XRQ Genome Portal

Assembly of the XRQ genome from PacBio data 2016
XRQr2.0 Genome Portal

Assembly of the XRQ genome from PacBio data 2018
HA412-HO Genome Portal (Bronze version)

Assembly of the HA412-HO genome from Illumina and 454 Roche data (2014)
HA412-HO Genome Portal (Newbler version)

Assembly of the HA412-HO genome from Illumina and 454 Roche data (2012)
PSC8 Genome

Assembly and annotation of the PSC8 genome from PacBio data (2018)
ICSG Repository

International Consortium of Sunflower Genomics Ressources
O. cumana Genome Portal (OcIN23-20170413)

Assembly of O. cumana genome from PacBio data (2017)


Plasmopara halstedii race 100A1 Genome annotation (2012)

Plasmopara halstedii race 100A1 Plasmopara halstedii race 100A1
Plasmopara halstedii race 304 Genome annotation (2012)

Plasmopara halstedii race 304 Plasmopara halstedii race 304
Plasmopara halstedii race 334 Genome annotation (2012)

Plasmopara halstedii race 334 Plasmopara halstedii race 334
Plasmopara halstedii race 700 Genome annotation (2012)

Plasmopara halstedii race 700 Plasmopara halstedii race 700
Plasmopara halstedii race 703 Genome annotation (2012)

Plasmopara halstedii race 703 Plasmopara halstedii race 703
Plasmopara halstedii race 710 Genome annotation (2012)

Plasmopara halstedii race 710 Plasmopara halstedii race 710
Plasmopara halstedii race 730 Genome annotation (2012)

Plasmopara halstedii race 730 Plasmopara halstedii race 730

Transcriptomes

SunExpress

Sunflower expression atlas
XRQ Transcriptome portal HaT13l

Assembly of the XRQ transcriptome from different organs (2012) (eFP browser)
HA412-HO Transcriptome portal Ha412T4l

Assembly of the HA412-HO transcriptome from different organs and stresses (2012)
Sunflower and Downy Mildew Transcriptome portal H+P

Assembly of the combined transcriptomes of Helianthus annuus and Plasmopara halstedii (2012)
Helianthus Transcriptome portal Hu2007

Assembly of the transcriptome from 7 different Helianthus species 2007 (corresponds to the Affymetrix chip)
P.halstedii transcriptome Portal (PLHAL20100804)

Assembly of Plasmopara halstedii transcriptome
Plasmopara species transcriptome Portal (PLASP)

Plasmopara sp. transcriptome resource based on P.halstedii and P.viticola transcriptomes (Mestre et al. 2016)