Annotation Statistics
General
- Nucleotides
(without 'N') - 2244433056
- GC %
- 37.62
- Total number of genes
- 97436 (187846726 bp)
Protein coding genes
- Number
- 90935
- Mean gene length
- 2048.13 bp
- Coding nucleotides
- 68991443 bp
- % genes with introns
- 77
- % genes with 5' UTR
- 41
- % genes with 3' UTR
- 41
Comparison with At (TAIR10)
- Full Length Best Hits (spanning 80% of the length of the At prot)
- 13568 Ha predicted peptides => 13906 TAIR10
- Full Length Best Hits (spanning 60% of the length of the At prot)
- 15852 Ha predicted peptides => 16127 TAIR10 peptides
mRNAs
- No EST support
- 41655 (45.85%)
- EST support >= 80
of the mRNA length - 39050 (42.98%)
mRNA with a short CDS (<100aa)
- Number
- 23267
- No EST support
- 11927 (51.26%)
- EST support >= 80
of the mRNA length - 8904 (38.27%)
Exons
- Mean number
per gene - 3.75
- Mean length (bp)
- 244.61
- GC %
- 42.16
Introns
- Mean number
per gene - 2.75
- Mean length (bp)
- 411.47
- GC %
- 33.20
CDS
- Mean length (bp)
- 758.69
- Min length (bp)
- 123.00
- Max length (bp)
- 14343.00
- GC %
- 43.20
UTRs
5' UTR
- Mean length (bp)
- 164.29
- GC %
- 40.41
3' UTR
- Mean length (bp)
- 223.45
- GC %
- 34.83
Annotation Pipeline
