HiFi and IsoSeq sequences

carrere - 2022/11/15 16:28

README

FILES



.
./ICSG-data-report-20221110.xlsx [36K]


./H.annuus2018-PI468468
./H.annuus2018-PI468468/Hannuus2018.m64071_220430_005326-HiFi1.subreads.ml5000.mp4.fastq.gz [29G]
./H.annuus2018-PI468468/Hannuus2018.m64243_220430_010340-HiFi2.subreads.ml5000.mp4.fastq.gz [30G]


./H.annuus2020-PI695720
./H.annuus2020-PI695720/Hannuus2020.PI695720.m64071_220423_214523.E591-HiFi1.subreads.ml5000.mp4.fastq.gz [24G]
./H.annuus2020-PI695720/Hannuus2020.PI695720.m64243_220423_222040.E591-HiFi2.subreads.ml5000.mp4.fastq.gz [27G]


./H.annuus2603-RM
./H.annuus2603-RM/Han2603RM.m64071_210723_005406-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [13G]
./H.annuus2603-RM/Han2603RM.m64243_220617_160041-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [30G]


./H.annuus833-PI468581
./H.annuus833-PI468581/Hannuus833.m64243_220425_075422-HiFi1.subreads.ml5000.mp4.fastq.gz [19G]
./H.annuus833-PI468581/Hannuus833.m64243_220428_155107-HiFi2.subreads.ml5000.mp4.fastq.gz [27G]


./H.annuus833-PI468581/Hannuus833-PI468581


./H.annuus83HR4RM
./H.annuus83HR4RM/Han83HR4RM.m64071_210913_192315-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [21G]


./H.annuusADV
./H.annuusADV/HanADV.m64243_210628_155037-E591-HiFi1.subreads.fastq.gz [24G]


./H.annuusCI
./H.annuusCI/HanCI.m64071_210915_042606-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [21G]
./H.annuusCI/HanCI.m64071_220617_160032-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [29G]


./H.annuusHA300
./H.annuusHA300/HanHA300.m64071_210917_154603-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [23G]


./H.annuusHA89
./H.annuusHA89/Ha89.IsoSeq.m64243_210731_164858-E591-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.3G]
./H.annuusHA89/Ha89.IsoSeq.m64243_210801_170316-E591-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.1G]
./H.annuusHA89/Ha89.IsoSeq.m64243_210802_171745-E591-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.1G]
./H.annuusHA89/HanHA89.m64071_210629_232720-E591-HiFi1.subreads.mp4.ml5000.fastq.gz [20G]
./H.annuusHA89/HanHA89.m64071_210701_065103-E591-HiFi3.subreads.mp4.ml5000.fastq.gz [20G]
./H.annuusHA89/HanHA89.m64243_210630_005342-E591-HiFi2.subreads.mp4.ml5000.fastq.gz [20G]
./H.annuusHA89/HanHA89.m64243_210709_164020-E591-HiFi4.subreads.mp4.ml5000.fastq.gz [19G]


./H.annuusHopiDye-PI432504
./H.annuusHopiDye-PI432504/HannHopiDye-PI432504.m64071_220807_021303-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [27G]
./H.annuusHopiDye-PI432504/HannHopiDye-PI432504.m64071_220821_013350-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [22G]


./H.annuusLR1
./H.annuusLR1/HanLR1.m64071_210919_024437-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [12G]
./H.annuusLR1/HanLR1.m64071_211014_153503-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [20G]


./H.annuusOQP8
./H.annuusOQP8/HanOQP8.m64071_210929_161127-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [20G]
./H.annuusOQP8/HanOQP8.m64243_210826_163450-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [11G]


./H.annuusPI659440
./H.annuusPI659440/HannuusPI659440.IsoSeq.m64243_210728_161903-E591-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.5G]
./H.annuusPI659440/HannuusPI659440.IsoSeq.m64243_210729_162021-E591-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.5G]
./H.annuusPI659440/HannuusPI659440.IsoSeq.m64243_210730_163432-E591-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.8G]
./H.annuusPI659440/HannuusPI659440.m64071_210601_160817-E591-Hifi1-Cell1.subreads.mp4.ml5000.ccs.fastq.gz [23G]
./H.annuusPI659440/HannuusPI659440.m64071_210623_011021-E591-Pl659440-5-Hifi5-Cell2.subreads.fastq.gz [17G]
./H.annuusPI659440/HannuusPI659440.m64071_210624_083455-E591-Pl659440-6-Hifi6-Cell3.subreads.fastq.gz [18G]
./H.annuusPI659440/HannuusPI659440.m64243_210603_010944-E591-Pl959440-2-Hifi2-Cell2.subreads.fastq.gz [20G]
./H.annuusPI659440/HannuusPI659440.m64243_210616_023425-E591-Pl659440-3-Hifi3-Cell2.subreads.fastq.gz [18G]
./H.annuusPI659440/HannuusPI659440.m64243_210617_100140-E591-Pl659440-4-Hifi4-Cell3.subreads.fastq.gz [17G]


./H.annuusPI673344
./H.annuusPI673344/HannPI673344.m64243_220627_085911-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [28G]
./H.annuusPI673344/HannPI673344.m64243_220628_195532-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [24G]
./H.annuusPI673344/HannPI673344-pas-Hpet-inversion-sequencage [0]


./H.annuusPW3RM
./H.annuusPW3RM/HanPW3RM.m64243_210907_180445-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [14G]


./H.annuusSeneca-PI369360
./H.annuusSeneca-PI369360/HannuusPI369360Seneca.m64071_220501_100412-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [27G]
./H.annuusSeneca-PI369360/HannuusPI369360Seneca.m64243_220501_101802-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [25G]


./H.argophyllus2202
./H.argophyllus2202/Harg2202.m64071_201208_162827-E591_2202-Hifi1-Cell1.subreads.fastq.gz [23G]
./H.argophyllus2202/Harg2202.m64071_201217_160500-E591_2202-Hifi3-Cell1.subreads.fastq.gz [22G]
./H.argophyllus2202/Harg2202.m64071_201218_222009-E591_2202-Hifi2-Cell2.subreads.fastq.gz [27G]
./H.argophyllus2202/Harg2202.m64071_210105_170931-E591_2202-Hifi4-Cell1.subreads.fastq.gz [34G]
./H.argophyllus2202/Harg2202.m64071_210417_125111-E591-2202-IsoSeq1-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.7G]
./H.argophyllus2202/Harg2202.m64071_210609_030723-E591_2202-Hifi6-Cell2.subreads.fastq.gz [37G]
./H.argophyllus2202/Harg2202.m64071_210616_023433-E591_2202-Hifi7-Cell2.subreads.fastq.gz [48G]
./H.argophyllus2202/Harg2202.m64243_210327_173154-E591_2202-Hifi5-Cell4.subreads.fastq.gz [27G]
./H.argophyllus2202/Harg2202.m64243_210410_131940-E591-2202-IsoSeq2-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.2G]
./H.argophyllus2202/Harg2202.m64243_210417_111942-E591-2202-IsoSeq3-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.2G]


./H.argophyllusARG13-PI695767
./H.argophyllusARG13-PI695767/HargARG13-PI695767.m64071_220808_120534-E591-HiFi1.subread.ml5000.mp4.fastq.gz [27G]
./H.argophyllusARG13-PI695767/HargARG13-PI695767.m64243_220808_131204-E591-HiFi2.subread.ml5000.mp4.fastq.gz [28G]


./H.argophyllusARG18-PI695772
./H.argophyllusARG18-PI695772/HargARG18-PI695772.m64071_220722_210844-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [26G]
./H.argophyllusARG18-PI695772/HargARG18-PI695772.m64243_220807_021402-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [27G]


./H.bolanderi584
./H.bolanderi584/Hbol584.m64071_210814_010051-E591-HiFi4.subreads.ml5000.mp4.fastq.gz [18G]
./H.bolanderi584/Hbol584.m64071_210815_085905-E591-HiFi5.subreads.ml5000.mp4.fastq.gz [21G]
./H.bolanderi584/Hbol584.m64071_210816_162644-E591-HiFi6.subreads.ml5000.mp4.fastq.gz [17G]
./H.bolanderi584/Hbol584.m64071_211023_163808-E591-IsoSeq-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.9G]
./H.bolanderi584/Hbol584.m64071_211024_165221-E591-IsoSeq-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.3G]
./H.bolanderi584/Hbol584.m64243_210805_154447-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [21G]
./H.bolanderi584/Hbol584.m64243_210806_225911-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [16G]
./H.bolanderi584/Hbol584.m64243_210808_080305-E591-HiFi3.subreads.ml5000.mp4.fastq.gz [19G]
./H.bolanderi584/Hbol584.m64243_211020_160834-E591-IsoSeq-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.1G]


./H.debilis2414
./H.debilis2414/Hdeb2414.m64071_210106_233659-E591_2414-Hifi1-Cell2.subreads.fastq.gz [49G]
./H.debilis2414/Hdeb2414.m64071_210119_223211-E591_2414-Hifi2-Cell2.subreads.fastq.gz [35G]
./H.debilis2414/Hdeb2414.m64071_210121_050025-E591_2414-Hifi3-Cell3.subreads.fastq.gz [44G]
./H.debilis2414/Hdeb2414.m64071_210129_233328-E591_2414-Hifi4-Cell2.subreads.fastq.gz [39G]
./H.debilis2414/Hdeb2414.m64071_210423_053152-E591-2414_IsoSeq1-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.1G]
./H.debilis2414/Hdeb2414.m64071_210605_084922-E591_2414-Hifi6-Cell5.subreads.fastq.gz [23G]
./H.debilis2414/Hdeb2414.m64243_210428_150709-E591-2414_IsoSeq3_Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.8G]
./H.debilis2414/Hdeb2414.m64243_210429_153511-E591-2414_IsoSeq2_Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [694M]
./H.debilis2414/Hdeb2414.m64243_210604_052431-E591_2414-Hifi5-Cell3.subreads.fastq.gz [31G]
./H.debilis2414/Hdeb2414.m64243_210609_030710-E591_2414-Hifi7-Cell2.subreads.fastq.gz [37G]


./H.debilis2420-PI468695
./H.debilis2420-PI468695/Hdeb2420-PI468695.m64071_220716_125729-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [24G]
./H.debilis2420-PI468695/Hdeb2420-PI468695.m64243_220716_125841-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [24G]


./H.debilis_cucumeriflorus2400-PI653609
./H.debilis_cucumeriflorus2400-PI653609/H.deb_cucum2400.m64071_220412_063033.E591-HiFi1.subreads.ml5000.mp4.fastq.gz [25G]
./H.debilis_cucumeriflorus2400-PI653609/H.deb_cucum2400.m64243_220413_144423.E591-HiFi2.subreads.ml5000.mp4.fastq.gz [26G]


./H.debilis_debilis835
./H.debilis_debilis835/H.deb_deb835.m64071_220413_155943.E591-HiFi1.subreads.ml5000.mp4.fastq.gz [25G]
./H.debilis_debilis835/H.deb_deb835.m64243_220421_002100.E591-HiFi2.subreads.ml5000.mp4.fastq.gz [24G]


./H.debilis-tardiflorus837-PI468689
./H.debilis-tardiflorus837-PI468689/Hdeb-tardiflorus837.m64071_220702_214341-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [26G]
./H.debilis-tardiflorus837-PI468689/Hdeb-tardiflorus837.m64243_220526_044329-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [26G]


./H.divaricatus783
./H.divaricatus783/Hdiv783.m64071_210819_130542-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [19G]
./H.divaricatus783/Hdiv783.m64071_210820_204122-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [22G]
./H.divaricatus783/Hdiv783.m64071_210822_054435-E591-HiFi3.subreads.ml5000.mp4.fastq.gz [18G]
./H.divaricatus783/Hdiv783.m64243_210818_170723-E591-HiFi4.subreads.ml5000.mp4.fastq.gz [19G]
./H.divaricatus783/Hdiv783.m64243_210820_005424-E591-HiFi5.subreads.ml5000.mp4.fastq.gz [21G]
./H.divaricatus783/Hdiv783.m64243_210821_095810-E591-HiFi6.subreads.ml5000.mp4.fastq.gz [19G]
./H.divaricatus783/Hdiv783.m64243_211021_161034-IsoSeq-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.2G]
./H.divaricatus783/Hdiv783.m64243_211022_162459-IsoSeq-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.1G]
./H.divaricatus783/Hdiv783.m64243_211023_163918-IsoSeq-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [2.4G]


./H.neglectus2702
./H.neglectus2702/Hneg2702.HiFi.m64071_200809_094855-E591_2702-neg-2-Cell4.subreads.ml5000.mp4.fastq.gz [55G]
./H.neglectus2702/Hneg2702.HiFi.m64071_200817_155514-E591_2702-neg-3-Cell1.subreads.ml5000.mp4.fastq.gz [42G]
./H.neglectus2702/Hneg2702.HiFi.m64071_200919_140816-E591_2702-neg-4-Cell3.subreads.ml5000.mp4.fastq.gz [14G]
./H.neglectus2702/Hneg2702.HiFi.m64071_200925_031052-E591_2702-neg-5-Cell4.subreads.ml5000.mp4.fastq.gz [55G]
./H.neglectus2702/Hneg2702.IsoSeq.m64071_201114_232719-E591-2702-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.9G]
./H.neglectus2702/Hneg2702.IsoSeq.m64071_201119_154341-E591-2702-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.9G]
./H.neglectus2702/Hneg2702.IsoSeq.m64071_201120_155819-E591-2702-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.8G]
./H.neglectus2702/Hneg2702.m64071_200921_004818-E591_2702-neg-1-CLR.subreads.fastq.gz [41G]
./H.neglectus2702/Hneg2702.m64071_201008_002136-E591_2702-neg-2-CLR-Cell2.subreads.fastq.gz [48G]


./H.paradoxus3200-PI673239
./H.paradoxus3200-PI673239/H.para3200.m64071_220410_211048.E591-HiFi1.subreads.ml5000.mp4.fastq.gz [24G]
./H.paradoxus3200-PI673239/H.para3200.m64071_220419_145535.E591-HiFi-4.subreads.ml5000.mp4.fastq.gz [25G]
./H.paradoxus3200-PI673239/H.para3200.m64071_220421_001941.E591-HiFi-6.subreads.ml5000.mp4.fastq.gz [23G]
./H.paradoxus3200-PI673239/H.para3200.m64071_220721_162051.E591-IsoSeq-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.7G]
./H.paradoxus3200-PI673239/H.para3200.m64243_220410_195756.E591-HiFi2.subreads.ml5000.mp4.fastq.gz [24G]
./H.paradoxus3200-PI673239/H.para3200.m64243_220412_051809.E591-HiFi3.subreads.ml5000.mp4.fastq.gz [23G]
./H.paradoxus3200-PI673239/H.para3200.m64243_220419_145645.E591-HiFi-5.subreads.ml5000.mp4.fastq.gz [21G]
./H.paradoxus3200-PI673239/H.para3200.m64243_220702_165444.E591-IsoSeq-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.6G]
./H.paradoxus3200-PI673239/H.para3200.m64243_220703_170626.E591-IsoSeq-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.8G]


./H.petiolaris-PET14-Utah-PI695694
./H.petiolaris-PET14-Utah-PI695694/Hpet.PET14-Utah-PI695694.m64071_220512_190039.E591-HiFi1.subreads.ml5000.mp4.fastq.gz [26G]
./H.petiolaris-PET14-Utah-PI695694/Hpet.PET14-Utah-PI695694.m64243_220511_141945.E591-HiFi2.subreads.ml5000.mp4.fastq.gz [25G]


./H.petiolaris-PET32-Arizona-PI695729
./H.petiolaris-PET32-Arizona-PI695729/Hpet.PET32-Arizona-PI695729.m64071_220422_100025.E591-HiFi-1.subreads.ml5000.mp4.fastq.gz [24G]
./H.petiolaris-PET32-Arizona-PI695729/Hpet.PET32-Arizona-PI695729.m64243_220422_111815.E591-HiFi-2.subreads.ml5000.mp4.fastq.gz [25G]


./H.petiolaris-PI695713
./H.petiolaris-PI695713/HpetPI695713.m64243_220624_110804-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [24G]
./H.petiolaris-PI695713/HpetPI695713.m64243_220625_220303-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [27G]


./H.praecox677
./H.praecox677/Hpra677.m64071_210804_160901-E591-HiFi1.subreads.ml5000.mp4.fastq.gz [20G]
./H.praecox677/Hpra677.m64071_210805_234613-E591-HiFi2.subreads.ml5000.mp4.fastq.gz [22G]
./H.praecox677/Hpra677.m64071_210807_071603-E591-HiFi3.subreads.ml5000.mp4.fastq.gz [21G]
./H.praecox677/Hpra677.m64071_211020_160848-E591-IsoSeq-Bud.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.7G]
./H.praecox677/Hpra677.m64071_211021_161023-E591-IsoSeq-Stem.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.6G]
./H.praecox677/Hpra677.m64071_211022_162424-E591-IsoSeq-Leaves.subreads.ccs.mp4.ml100.lima-isoseq.5p--3p.fasta.gz [1.8G]
./H.praecox677/Hpra677.m64243_210811_170036-E591-HiFi4.subreads.ml5000.mp4.fastq.gz [23G]
./H.praecox677/Hpra677.m64243_210813_003217-E591-HiFi5.subreads.ml5000.mp4.fastq.gz [24G]
./H.praecox677/Hpra677.m64243_210814_075651-E591-HiFi6.subreads.ml5000.mp4.fastq.gz [22G]